HL_6WOO_024

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

6WOO|1|2|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2297

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6WOO|1|2|U|1055
6WOO|1|2|U|1056
6WOO|1|2|U|1057
6WOO|1|2|U|1058
6WOO|1|2|U|1059
6WOO|1|2|U|1060
6WOO|1|2|A|1061
6WOO|1|2|A|1062
6WOO|1|2|U|1063
6WOO|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain bb

eS27