HL_6WOO_025

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_025 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.114

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6WOO|1|2|A|1084
6WOO|1|2|G|1085
6WOO|1|2|A|1086
6WOO|1|2|A|1087
6WOO|1|2|A|1088
6WOO|1|2|U|1089

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain WW

uS8

Chain aa

eS26