HL_6WOO_038
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGUGGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6WOO|1|3|G|17, 6WOO|1|3|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_038 not in the Motif Atlas
- Homologous match to HL_4V90_032
- Geometric discrepancy: 0.1912
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6WOO|1|3|C|13
6WOO|1|3|A|14
6WOO|1|3|G|15
6WOO|1|3|U|16
6WOO|1|3|G|17
6WOO|1|3|G|18
6WOO|1|3|G|19
6WOO|1|3|A|20
6WOO|1|3|A|21
6WOO|1|3|G|22
Current chains
- Chain 3
- Met-tRNA-iMet
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: