HL_6WOO_044

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6WOO|1|5|U|133, 6WOO|1|5|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_044 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1131

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6WOO|1|5|C|132
6WOO|1|5|U|133
6WOO|1|5|U|134
6WOO|1|5|C|135
6WOO|1|5|G|136

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain N

eL15

Chain h

uL29