HL_6WOO_054

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6WOO|1|5|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_054 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.0785

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6WOO|1|5|U|640
6WOO|1|5|C|641
6WOO|1|5|U|642
6WOO|1|5|U|643
6WOO|1|5|G|644
6WOO|1|5|A|645
6WOO|1|5|A|646
6WOO|1|5|A|647
6WOO|1|5|C|648
6WOO|1|5|A|649

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32