HL_6WOO_083

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6WOO|1|5|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_083 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1133

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6WOO|1|5|C|1923
6WOO|1|5|U|1924
6WOO|1|5|U|1925
6WOO|1|5|C|1926
6WOO|1|5|G|1927
6WOO|1|5|G|1928

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43