HL_6WOO_095

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6WOO|1|5|A|2637, 6WOO|1|5|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_095 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0686

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6WOO|1|5|U|2633
6WOO|1|5|U|2634
6WOO|1|5|A|2635
6WOO|1|5|A|2636
6WOO|1|5|A|2637
6WOO|1|5|C|2638
6WOO|1|5|G|2639
6WOO|1|5|A|2640
6WOO|1|5|U|2641
6WOO|1|5|A|2642
6WOO|1|5|A|2643
6WOO|1|5|C|2644
6WOO|1|5|G|2645

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

uL16

Chain T

eL21

Chain b

eL29