3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGUUCAUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WOO_101 not in the Motif Atlas
Homologous match to HL_5TBW_061
Geometric discrepancy: 0.1424
The information below is about HL_5TBW_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82661.1
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6WOO|1|5|C|2840
6WOO|1|5|G|2841
6WOO|1|5|U|2842
6WOO|1|5|U|2843
6WOO|1|5|C|2844
6WOO|1|5|A|2845
6WOO|1|5|U|2846
6WOO|1|5|A|2847
6WOO|1|5|G|2848

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 1
eIF5B
Chain I
uL16
Chain m
eL40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1556 s