HL_6WOO_101
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_101 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.1424
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6WOO|1|5|C|2840
6WOO|1|5|G|2841
6WOO|1|5|U|2842
6WOO|1|5|U|2843
6WOO|1|5|C|2844
6WOO|1|5|A|2845
6WOO|1|5|U|2846
6WOO|1|5|A|2847
6WOO|1|5|G|2848
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- eIF5B
- Chain I
- uL16
- Chain m
- eL40
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