HL_6WOO_106

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_106 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.0884

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6WOO|1|5|U|3068
6WOO|1|5|G|3069
6WOO|1|5|A|3070
6WOO|1|5|U|3071
6WOO|1|5|C|3072
6WOO|1|5|A|3073

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

eL22

Chain d

eL31