HL_6WQQ_018

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

6WQQ|1|1|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_018 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2459

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6WQQ|1|1|A|655
6WQQ|1|1|G|656
6WQQ|1|1|U|657
6WQQ|1|1|A|658
6WQQ|1|1|A|659
6WQQ|1|1|A|660
6WQQ|1|1|U|661

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L4