HL_6WQQ_026

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

6WQQ|1|1|U|1002, 6WQQ|1|1|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_026 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1152

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6WQQ|1|1|U|999
6WQQ|1|1|G|1000
6WQQ|1|1|A|1001
6WQQ|1|1|U|1002
6WQQ|1|1|A|1003
6WQQ|1|1|A|1004
6WQQ|1|1|G|1005
6WQQ|1|1|G|1006

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16