HL_6WQQ_044

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

6WQQ|1|1|U|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_044 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1922

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6WQQ|1|1|C|1833
6WQQ|1|1|G|1834
6WQQ|1|1|U|1835
6WQQ|1|1|A|1836
6WQQ|1|1|A|1837
6WQQ|1|1|G|1838

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain J

50S ribosomal protein L28