HL_6WQQ_047

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6WQQ|1|1|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.14

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6WQQ|1|1|G|1976
6WQQ|1|1|G|1977
6WQQ|1|1|U|1978
6WQQ|1|1|A|1979
6WQQ|1|1|A|1980
6WQQ|1|1|G|1981
6WQQ|1|1|U|1982
6WQQ|1|1|U|1983
6WQQ|1|1|C|1984

Current chains

Chain 1

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L14