HL_6WQQ_070

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6WQQ|1|1|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_070 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.143

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

6WQQ|1|1|C|348
6WQQ|1|1|U|349
6WQQ|1|1|G|350
6WQQ|1|1|G|351
6WQQ|1|1|A|352
6WQQ|1|1|A|353
6WQQ|1|1|A|354
6WQQ|1|1|G|355

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L24