HL_6WYV_012

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6WYV|1|I|G|386, 6WYV|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WYV_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1229

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WYV|1|I|A|382
6WYV|1|I|C|383
6WYV|1|I|A|384
6WYV|1|I|C|385
6WYV|1|I|G|386
6WYV|1|I|U|387
6WYV|1|I|G|388
6WYV|1|I|G|389
6WYV|1|I|U|390
6WYV|1|I|A|391
6WYV|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains