HL_6XA1_001

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAA(H2U)CGGAG

Length

9 nucleotides

Bulged bases

6XA1|1|Bv|C|17, 6XA1|1|Bv|G|18, 6XA1|1|Bv|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_001 not in the Motif Atlas

Homologous match to HL_5E81_205

Geometric discrepancy: 0.2317

The information below is about HL_5E81_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|Bv|C|13
6XA1|1|Bv|A|14
6XA1|1|Bv|A|15
6XA1|1|Bv|H2U|16
6XA1|1|Bv|C|17
6XA1|1|Bv|G|18
6XA1|1|Bv|G|19
6XA1|1|Bv|A|21
6XA1|1|Bv|G|22

Current chains

Chain Bv

P-tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

60S ribosomal protein L36a