HL_6XA1_002
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCUGUU(UY4)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UY4
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XA1_002 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1337
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6XA1|1|Bv|G|31
6XA1|1|Bv|C|32
6XA1|1|Bv|U|33
6XA1|1|Bv|G|34
6XA1|1|Bv|U|35
6XA1|1|Bv|U|36
6XA1|1|Bv|UY4|37
6XA1|1|Bv|A|38
6XA1|1|Bv|C|39
Current chains
- Chain Bv
- P-tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- 40S ribosomal protein S16
- Chain j
- Eukaryotic peptide chain release factor subunit 1
- Chain k
- mRNA
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