HL_6XA1_010
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 6XA1|1|L5|G|229
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XA1_010 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.1363
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6XA1|1|L5|G|227
6XA1|1|L5|U|228
6XA1|1|L5|G|229
6XA1|1|L5|U|230
6XA1|1|L5|G|231
6XA1|1|L5|A|232
6XA1|1|L5|G|233
6XA1|1|L5|G|234
6XA1|1|L5|C|235
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
Coloring options: