HL_6XA1_014

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_014 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3138

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6XA1|1|L5|U|383
6XA1|1|L5|U|384
6XA1|1|L5|G|385
6XA1|1|L5|A|386
6XA1|1|L5|A|387
6XA1|1|L5|G|388
6XA1|1|L5|A2M|389
6XA1|1|L5|G|390

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17