HL_6XA1_026

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

6XA1|1|L5|C|1663, 6XA1|1|L5|C|1665, 6XA1|1|L5|A|1666

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_026 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.2296

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XA1|1|L5|C|1662
6XA1|1|L5|C|1663
6XA1|1|L5|PSU|1664
6XA1|1|L5|C|1665
6XA1|1|L5|A|1666
6XA1|1|L5|G|1667

Current chains

Chain L5

28S rRNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a