HL_6XA1_042

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

6XA1|1|L5|C|2696, 6XA1|1|L5|G|2698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_042 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3881

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6XA1|1|L5|C|2691
6XA1|1|L5|G|2692
6XA1|1|L5|G|2693
6XA1|1|L5|U|2694
6XA1|1|L5|U|2695
6XA1|1|L5|C|2696
6XA1|1|L5|C|2697
6XA1|1|L5|G|2698
6XA1|1|L5|G|2699

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain LX

60S ribosomal protein L23a