HL_6XA1_045

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

6XA1|1|L5|C|2801

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_045 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0847

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6XA1|1|L5|U|2797
6XA1|1|L5|G|2798
6XA1|1|L5|A|2799
6XA1|1|L5|A|2800
6XA1|1|L5|C|2801
6XA1|1|L5|A2M|2802
6XA1|1|L5|G|2803

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19