HL_6XA1_057

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6XA1|1|L5|A|4184, 6XA1|1|L5|C|4191

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_057 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.0979

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6XA1|1|L5|U|4180
6XA1|1|L5|C|4181
6XA1|1|L5|A|4182
6XA1|1|L5|A|4183
6XA1|1|L5|A|4184
6XA1|1|L5|C|4185
6XA1|1|L5|G|4186
6XA1|1|L5|G|4187
6XA1|1|L5|U|4188
6XA1|1|L5|A|4189
6XA1|1|L5|6MZ|4190
6XA1|1|L5|C|4191
6XA1|1|L5|G|4192

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29