HL_6XA1_062
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 6XA1|1|L5|U|4324
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XA1_062 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.4923
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
6XA1|1|L5|U|4322
6XA1|1|L5|PSU|4323
6XA1|1|L5|U|4324
6XA1|1|L5|G|4325
6XA1|1|L5|G|4326
6XA1|1|L5|G|4327
6XA1|1|L5|U|4328
6XA1|1|L5|U|4329
6XA1|1|L5|U|4330
6XA1|1|L5|PSU|4331
6XA1|1|L5|A|4332
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain La
- 60S ribosomal protein L27a
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
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