HL_6XA1_063

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

6XA1|1|L5|U|4389, 6XA1|1|L5|A|4392

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_063 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3989

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6XA1|1|L5|C|4387
6XA1|1|L5|G|4388
6XA1|1|L5|U|4389
6XA1|1|L5|PSU|4390
6XA1|1|L5|C|4391
6XA1|1|L5|A|4392
6XA1|1|L5|PSU|4393
6XA1|1|L5|A|4394
6XA1|1|L5|G|4395

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

60S ribosomal protein L40

Chain j

Eukaryotic peptide chain release factor subunit 1