HL_6XA1_064

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6XA1|1|L5|G|4445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1103

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6XA1|1|L5|A|4444
6XA1|1|L5|G|4445
6XA1|1|L5|C|4446
6XA1|1|L5|A|4447
6XA1|1|L5|G|4448
6XA1|1|L5|A|4449
6XA1|1|L5|A|4450
6XA1|1|L5|U|4451

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

60S ribosomal protein L40

Chain j

Eukaryotic peptide chain release factor subunit 1