HL_6XA1_072

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6XA1|1|L5|C|4988

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_072 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3817

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6XA1|1|L5|C|4986
6XA1|1|L5|U|4987
6XA1|1|L5|C|4988
6XA1|1|L5|C|4989
6XA1|1|L5|C|4990
6XA1|1|L5|U|4991
6XA1|1|L5|C|4992
6XA1|1|L5|G|4993

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

Heparin-binding protein HBp15

Chain SI

40S ribosomal protein S8