HL_6XA1_075
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XA1_075 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2804
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6XA1|1|L8|C|47
6XA1|1|L8|A|48
6XA1|1|L8|G|49
6XA1|1|L8|C|50
6XA1|1|L8|U|51
6XA1|1|L8|A|52
6XA1|1|L8|G|53
6XA1|1|L8|C|54
6XA1|1|L8|PSU|55
6XA1|1|L8|G|56
Current chains
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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