HL_6XA1_077

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

6XA1|1|L8|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_077 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.1831

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6XA1|1|L8|C|107
6XA1|1|L8|A|108
6XA1|1|L8|C|109
6XA1|1|L8|U|110
6XA1|1|L8|U|111
6XA1|1|L8|G|112

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39