HL_6XA1_101
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6XA1|1|S2|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XA1_101 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1088
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6XA1|1|S2|G|1245
6XA1|1|S2|A|1246
6XA1|1|S2|C|1247
6XA1|1|S2|B8N|1248
6XA1|1|S2|C|1249
6XA1|1|S2|A|1250
6XA1|1|S2|A|1251
6XA1|1|S2|C|1252
6XA1|1|S2|A|1253
6XA1|1|S2|C|1254
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Bv
- Transfer RNA; tRNA
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
- Chain j
- Eukaryotic peptide chain release factor subunit 1
Coloring options: