HL_6XDQ_078

3D structure

PDB id

6XDQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6XDQ|1|a|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XDQ_078 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0834

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XDQ|1|a|A|1630
6XDQ|1|a|G|1631
6XDQ|1|a|A|1632
6XDQ|1|a|G|1633
6XDQ|1|a|A|1634
6XDQ|1|a|A|1635
6XDQ|1|a|U|1636

Current chains

Chain a

23S rRNA

Nearby chains