HL_6XDR_005
3D structure
- PDB id
- 6XDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- 6XDR|1|B|A|37
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XDR_005 not in the Motif Atlas
- Homologous match to HL_7OSM_128
- Geometric discrepancy: 0.5735
- The information below is about HL_7OSM_128
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6XDR|1|B|G|29
6XDR|1|B|G|30
6XDR|1|B|G|31
6XDR|1|B|C|32
6XDR|1|B|U|33
6XDR|1|B|C|34
6XDR|1|B|A|35
6XDR|1|B|U|36
6XDR|1|B|A|37
6XDR|1|B|A|38
6XDR|1|B|C|39
6XDR|1|B|C|40
6XDR|1|B|C|41
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain 7
- mRNA with 27 nt long spacer
- Chain A
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein S9
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