3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
UGAAAAA
Length
7 nucleotides
Bulged bases
6XDR|1|a|A|751, 6XDR|1|a|A|752
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XDR_059 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0458
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6XDR|1|a|U|744
6XDR|1|a|G|748
6XDR|1|a|A|749
6XDR|1|a|A|750
6XDR|1|a|A|751
6XDR|1|a|A|752
6XDR|1|a|A|753

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain j
50S ribosomal protein L3
Chain m
50S ribosomal protein L34

Coloring options:


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