HL_6XE0_008

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XE0_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1715

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6XE0|1|W|A|320
6XE0|1|W|A|321
6XE0|1|W|C|322
6XE0|1|W|U|323
6XE0|1|W|G|324
6XE0|1|W|A|325
6XE0|1|W|G|326
6XE0|1|W|A|327
6XE0|1|W|C|328
6XE0|1|W|A|329
6XE0|1|W|C|330
6XE0|1|W|G|331
6XE0|1|W|G|332
6XE0|1|W|U|333

Current chains

Chain W

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20