HL_6XE0_024

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6XE0|1|W|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XE0_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.2035

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6XE0|1|W|G|1089
6XE0|1|W|U|1090
6XE0|1|W|U|1091
6XE0|1|W|A|1092
6XE0|1|W|A|1093
6XE0|1|W|G|1094
6XE0|1|W|U|1095
6XE0|1|W|C|1096

Current chains

Chain W

16s rRNA

Nearby chains

Chain A

30S ribosomal protein S2

Chain F

30S ribosomal protein S7