HL_6XHW_177

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6XHW|1|2A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHW_177 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0929

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6XHW|1|2A|C|2745
6XHW|1|2A|U|2746
6XHW|1|2A|G|2747
6XHW|1|2A|A|2748
6XHW|1|2A|A|2749
6XHW|1|2A|A|2750
6XHW|1|2A|G|2751
6XHW|1|2A|C|2752
6XHW|1|2A|A|2753
6XHW|1|2A|U|2754
6XHW|1|2A|C|2755
6XHW|1|2A|U|2756
6XHW|1|2A|A|2757
6XHW|1|2A|A|2758
6XHW|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6