HL_6XII_056

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XII_056 not in the Motif Atlas

Homologous match to HL_5J7L_152

Geometric discrepancy: 0.0415

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6XII|1|a|G|629
6XII|1|a|G|630
6XII|1|a|A|631
6XII|1|a|A|632
6XII|1|a|A|633
6XII|1|a|C|634

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15