HL_6XIJ_059

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

UGAAAAA

Length

7 nucleotides

Bulged bases

6XIJ|1|a|A|751, 6XIJ|1|a|A|752

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIJ_059 not in the Motif Atlas

Homologous match to HL_5J7L_155

Geometric discrepancy: 0.0456

The information below is about HL_5J7L_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6XIJ|1|a|U|744
6XIJ|1|a|G|748
6XIJ|1|a|A|749
6XIJ|1|a|A|750
6XIJ|1|a|A|751
6XIJ|1|a|A|752
6XIJ|1|a|A|753

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain j

50S ribosomal protein L3

Chain m

50S ribosomal protein L34