HL_6XIQ_015
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6XIQ|1|1|C|641, 6XIQ|1|1|U|642, 6XIQ|1|1|A|645, 6XIQ|1|1|A|646, 6XIQ|1|1|A|647, 6XIQ|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_015 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2715
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XIQ|1|1|U|640
6XIQ|1|1|C|641
6XIQ|1|1|U|642
6XIQ|1|1|U|643
6XIQ|1|1|G|644
6XIQ|1|1|A|645
6XIQ|1|1|A|646
6XIQ|1|1|A|647
6XIQ|1|1|C|648
6XIQ|1|1|A|649
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain a
- 60S ribosomal protein L28
- Chain b
- RPL29 isoform 1
- Chain e
- RPL32 isoform 1
Coloring options: