HL_6XIQ_022

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6XIQ|1|1|C|961, 6XIQ|1|1|A|962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.5732

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XIQ|1|1|C|958
6XIQ|1|1|C|959
6XIQ|1|1|U|960
6XIQ|1|1|C|961
6XIQ|1|1|A|962
6XIQ|1|1|G|963

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L28

Chain b

RPL29 isoform 1

Chain o

60S ribosomal protein L42-A