HL_6XIQ_027
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 6XIQ|1|1|A|1240, 6XIQ|1|1|U|1241, 6XIQ|1|1|G|1242, 6XIQ|1|1|G|1243, 6XIQ|1|1|A|1244, 6XIQ|1|1|A|1245, 6XIQ|1|1|G|1246, 6XIQ|1|1|U|1247
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_027 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.35
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XIQ|1|1|C|1239
6XIQ|1|1|A|1240
6XIQ|1|1|U|1241
6XIQ|1|1|G|1242
6XIQ|1|1|G|1243
6XIQ|1|1|A|1244
6XIQ|1|1|A|1245
6XIQ|1|1|G|1246
6XIQ|1|1|U|1247
6XIQ|1|1|C|1248
6XIQ|1|1|G|1249
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain P0
- RPP0 isoform 1
- Chain P2
- RPL12A isoform 1
Coloring options: