HL_6XIQ_028
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAGUGUGUAACAACUC
- Length
- 16 nucleotides
- Bulged bases
- 6XIQ|1|1|A|1263, 6XIQ|1|1|G|1264, 6XIQ|1|1|U|1265, 6XIQ|1|1|G|1268, 6XIQ|1|1|U|1269, 6XIQ|1|1|A|1270, 6XIQ|1|1|A|1271, 6XIQ|1|1|C|1272, 6XIQ|1|1|A|1273, 6XIQ|1|1|C|1275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_028 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3946
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XIQ|1|1|G|1262
6XIQ|1|1|A|1263
6XIQ|1|1|G|1264
6XIQ|1|1|U|1265
6XIQ|1|1|G|1266
6XIQ|1|1|U|1267
6XIQ|1|1|G|1268
6XIQ|1|1|U|1269
6XIQ|1|1|A|1270
6XIQ|1|1|A|1271
6XIQ|1|1|C|1272
6XIQ|1|1|A|1273
6XIQ|1|1|A|1274
6XIQ|1|1|C|1275
6XIQ|1|1|U|1276
6XIQ|1|1|C|1277
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain P0
- RPP0 isoform 1
- Chain P2
- RPL12A isoform 1
- Chain m
- 60S ribosomal protein L40
Coloring options: