3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGUAC
Length
5 nucleotides
Bulged bases
6XIQ|1|1|G|2111
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XIQ_045 not in the Motif Atlas
Homologous match to HL_8C3A_045
Geometric discrepancy: 0.248
The information below is about HL_8C3A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

6XIQ|1|1|G|2110
6XIQ|1|1|G|2111
6XIQ|1|1|U|2112
6XIQ|1|1|A|2113
6XIQ|1|1|C|2114

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain W
RPL24A isoform 1

Coloring options:


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