HL_6XIQ_051

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6XIQ|1|1|G|2370, 6XIQ|1|1|G|2371, 6XIQ|1|1|A|2372, 6XIQ|1|1|A|2373, 6XIQ|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_051 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3308

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6XIQ|1|1|G|2369
6XIQ|1|1|G|2370
6XIQ|1|1|G|2371
6XIQ|1|1|A|2372
6XIQ|1|1|A|2373
6XIQ|1|1|C|2374
6XIQ|1|1|G|2375
6XIQ|1|1|G|2376
6XIQ|1|1|G|2377
6XIQ|1|1|C|2378

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1