3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GCUUCGGC
Length
8 nucleotides
Bulged bases
6XIQ|1|1|C|2470, 6XIQ|1|1|U|2471, 6XIQ|1|1|U|2472, 6XIQ|1|1|C|2473, 6XIQ|1|1|G|2475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XIQ_052 not in the Motif Atlas
Geometric match to HL_8C3A_022
Geometric discrepancy: 0.3462
The information below is about HL_8C3A_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

6XIQ|1|1|G|2469
6XIQ|1|1|C|2470
6XIQ|1|1|U|2471
6XIQ|1|1|U|2472
6XIQ|1|1|C|2473
6XIQ|1|1|G|2474
6XIQ|1|1|G|2475
6XIQ|1|1|C|2476

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain L1
RPL1A isoform 1
Chain v
Rps5p

Coloring options:


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