HL_6XIQ_052
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCUUCGGC
- Length
- 8 nucleotides
- Bulged bases
- 6XIQ|1|1|C|2470, 6XIQ|1|1|U|2471, 6XIQ|1|1|U|2472, 6XIQ|1|1|C|2473, 6XIQ|1|1|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_052 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3462
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XIQ|1|1|G|2469
6XIQ|1|1|C|2470
6XIQ|1|1|U|2471
6XIQ|1|1|U|2472
6XIQ|1|1|C|2473
6XIQ|1|1|G|2474
6XIQ|1|1|G|2475
6XIQ|1|1|C|2476
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain L1
- RPL1A isoform 1
- Chain v
- Rps5p
Coloring options: