HL_6XIQ_083

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6XIQ|1|2|A|452, 6XIQ|1|2|U|453, 6XIQ|1|2|U|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_083 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2409

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6XIQ|1|2|U|450
6XIQ|1|2|A|451
6XIQ|1|2|A|452
6XIQ|1|2|U|453
6XIQ|1|2|U|454
6XIQ|1|2|C|455
6XIQ|1|2|A|456

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain u

40S ribosomal protein S4-A