HL_6XIQ_087

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCCGGUCGGAUUUC

Length

14 nucleotides

Bulged bases

6XIQ|1|2|C|654, 6XIQ|1|2|G|656, 6XIQ|1|2|U|657, 6XIQ|1|2|C|658, 6XIQ|1|2|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_087 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3649

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XIQ|1|2|G|652
6XIQ|1|2|C|653
6XIQ|1|2|C|654
6XIQ|1|2|G|655
6XIQ|1|2|G|656
6XIQ|1|2|U|657
6XIQ|1|2|C|658
6XIQ|1|2|G|676
6XIQ|1|2|G|677
6XIQ|1|2|A|678
6XIQ|1|2|U|679
6XIQ|1|2|U|680
6XIQ|1|2|U|681
6XIQ|1|2|C|682

Current chains

Chain 2

18S ribosomal RNA

Nearby chains