HL_6XIQ_102

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCAUUUGC

Length

8 nucleotides

Bulged bases

6XIQ|1|2|A|1360, 6XIQ|1|2|U|1361, 6XIQ|1|2|U|1363, 6XIQ|1|2|G|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_102 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3863

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6XIQ|1|2|G|1358
6XIQ|1|2|C|1359
6XIQ|1|2|A|1360
6XIQ|1|2|U|1361
6XIQ|1|2|U|1362
6XIQ|1|2|U|1363
6XIQ|1|2|G|1364
6XIQ|1|2|C|1365

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A