HL_6XIQ_118

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6XIQ|1|AZ|U|16, 6XIQ|1|AZ|U|17, 6XIQ|1|AZ|G|18, 6XIQ|1|AZ|G|19, 6XIQ|1|AZ|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_118 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.5004

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6XIQ|1|AZ|C|13
6XIQ|1|AZ|A|14
6XIQ|1|AZ|G|15
6XIQ|1|AZ|U|16
6XIQ|1|AZ|U|17
6XIQ|1|AZ|G|18
6XIQ|1|AZ|G|19
6XIQ|1|AZ|G|20
6XIQ|1|AZ|A|21
6XIQ|1|AZ|G|22

Current chains

Chain AZ

Transfer RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AF

RPS15 isoform 1