HL_6XIQ_126

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

6XIQ|1|2|U|1398, 6XIQ|1|2|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_126 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.5496

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

6XIQ|1|2|U|1396
6XIQ|1|2|U|1397
6XIQ|1|2|U|1398
6XIQ|1|2|C|1399
6XIQ|1|2|A|1400
6XIQ|1|2|A|1401
6XIQ|1|2|G|1402

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B